Variant report
Variant | rs1569251 |
---|---|
Chromosome Location | chr7:53837397-53837398 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1110242 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs12530813 | 0.89[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs1264112 | 0.80[AMR][1000 genomes] |
rs12718817 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap] |
rs13230296 | 0.87[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs13234436 | 0.87[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs1569250 | 0.90[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs17669013 | 1.00[ASW][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs1919801 | 0.85[JPT][hapmap];1.00[YRI][hapmap] |
rs1919802 | 0.81[JPT][hapmap];1.00[YRI][hapmap] |
rs34898610 | 0.92[ASN][1000 genomes] |
rs4947830 | 0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948546 | chr7:53538304-54337148 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | nsv1031042 | chr7:53758613-53860523 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv538852 | chr7:53758613-53860523 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv831006 | chr7:53769412-53930274 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv888047 | chr7:53813283-54031396 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:53832000-53837800 | Weak transcription | K562 | blood |