Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:132600387..132601705-chr6:132618997..132620734,23	MCF-7	breast:
2	chr6:132600647..132601321-chr6:132619115..132620190,4	MCF-7	breast:
3	chr6:132618961..132619982-chr6:132805082..132805920,3	MCF-7	breast:
4	chr6:132600758..132601636-chr6:132619204..132619917,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1079654	0.91[EUR][1000 genomes]
rs11754360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11760080	0.91[EUR][1000 genomes]
rs15017	0.95[EUR][1000 genomes]
rs1569524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569526	0.91[EUR][1000 genomes]
rs1569527	0.91[EUR][1000 genomes]
rs17061146	0.93[EUR][1000 genomes]
rs17061204	0.82[CHB][hapmap]
rs2092236	0.91[EUR][1000 genomes]
rs41286160	1.00[EUR][1000 genomes]
rs41286162	0.95[EUR][1000 genomes]
rs4895935	0.82[CHB][hapmap]
rs6569789	0.91[EUR][1000 genomes]
rs6903616	0.93[EUR][1000 genomes]
rs6917708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6925076	0.91[EUR][1000 genomes]
rs72992830	0.95[EUR][1000 genomes]
rs72992838	0.91[EUR][1000 genomes]
rs760811	0.91[EUR][1000 genomes]
rs7754123	0.82[CHB][hapmap]
rs7760422	0.91[EUR][1000 genomes]
rs7765608	0.95[EUR][1000 genomes]
rs9483431	0.93[EUR][1000 genomes]
rs9483432	0.91[EUR][1000 genomes]
rs9483433	0.91[EUR][1000 genomes]
rs9483435	0.82[CHB][hapmap]
rs9493275	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132611000-132625600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:132612600-132626400	Weak transcription	Fetal Stomach	stomach
3	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
4	chr6:132616200-132620400	Weak transcription	Esophagus	oesophagus
5	chr6:132616200-132625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:132616600-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:132617200-132627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:132617600-132626200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:132618400-132631600	Weak transcription	Fetal Kidney	kidney
10	chr6:132618600-132624600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:132618600-132626200	Weak transcription	Osteobl	bone
12	chr6:132618800-132620400	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:132618800-132634600	Weak transcription	NHDF-Ad	bronchial
14	chr6:132619000-132620200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:132619000-132622800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:132619000-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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