Variant report

Variant	rs4895935
Chromosome Location	chr6:132679793-132679794
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1569525	0.82[CHB][hapmap]
rs17061204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876176	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56352231	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58201648	0.91[ASN][1000 genomes]
rs58272798	0.85[EUR][1000 genomes]
rs60561448	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6917708	0.82[CHB][hapmap]
rs73546003	0.85[EUR][1000 genomes]
rs73546006	0.85[EUR][1000 genomes]
rs73546009	0.85[EUR][1000 genomes]
rs73546020	0.85[EUR][1000 genomes]
rs73546027	0.83[ASN][1000 genomes]
rs73546028	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546029	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546091	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7771227	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483435	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132673800-132683000	Weak transcription	Esophagus	oesophagus
2	chr6:132676400-132681800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:132676400-132686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132676600-132681400	Weak transcription	Fetal Stomach	stomach
5	chr6:132676600-132682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:132677200-132688600	Weak transcription	Osteobl	bone
7	chr6:132677400-132680200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:132677400-132681000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:132677400-132681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:132677400-132701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132677600-132681200	Weak transcription	Fetal Lung	lung
12	chr6:132678400-132681400	Weak transcription	Fetal Kidney	kidney
13	chr6:132678600-132681800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:132678600-132690400	Weak transcription	NH-A	brain
15	chr6:132679000-132690000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:132679200-132681000	Weak transcription	Primary B cells from cord blood	blood
17	chr6:132679200-132683800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:132679400-132681200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:132679600-132681200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:132679600-132683600	Weak transcription	NHDF-Ad	bronchial

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