Variant report

Variant	rs73546028
Chromosome Location	chr6:132655878-132655879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132653758..132656591-chr6:132657655..132660147,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17061204	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2876176	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4895935	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56352231	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58201648	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58272798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60561448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546003	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546006	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546009	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546091	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7754123	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7771227	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483435	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
4	chr6:132652000-132665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132652800-132657600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:132654600-132656000	Flanking Active TSS	A549	lung
7	chr6:132654600-132656200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:132654600-132656800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:132654600-132658400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:132654800-132656000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:132654800-132656000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:132654800-132656000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:132654800-132656000	Enhancers	Placenta	Placenta
14	chr6:132654800-132656000	Enhancers	NHLF	lung
15	chr6:132654800-132656200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:132654800-132656200	Enhancers	HMEC	breast
17	chr6:132654800-132656200	Enhancers	NHEK	skin
18	chr6:132654800-132656400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:132654800-132656800	Enhancers	NHDF-Ad	bronchial
20	chr6:132654800-132657800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:132655000-132656000	Enhancers	Fetal Intestine Large	intestine
22	chr6:132655000-132656000	Enhancers	Fetal Intestine Small	intestine
23	chr6:132655000-132656200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:132655000-132656200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:132655000-132656400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:132655400-132656000	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr6:132655600-132656000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:132655600-132656000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:132655600-132656000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr6:132655600-132656000	Flanking Active TSS	HSMMtube	muscle
31	chr6:132655600-132656000	Flanking Active TSS	NH-A	brain
32	chr6:132655600-132656000	Flanking Active TSS	Osteobl	bone
33	chr6:132655600-132656400	Enhancers	HSMM	muscle
34	chr6:132655800-132656400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:132655800-132656400	Enhancers	HepG2	liver
36	chr6:132655800-132662400	Weak transcription	Fetal Kidney	kidney

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