Variant report

Variant	rs73546009
Chromosome Location	chr6:132647173-132647174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17061204	0.85[EUR][1000 genomes]
rs2876176	0.85[EUR][1000 genomes]
rs4895935	0.85[EUR][1000 genomes]
rs56352231	1.00[EUR][1000 genomes]
rs58201648	0.92[EUR][1000 genomes]
rs58272798	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60561448	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546006	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546020	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546027	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546028	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546029	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546091	0.85[EUR][1000 genomes]
rs7754123	1.00[EUR][1000 genomes]
rs7771227	1.00[EUR][1000 genomes]
rs9483435	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132626600-132651400	Weak transcription	Fetal Stomach	stomach
2	chr6:132635600-132655000	Weak transcription	NH-A	brain
3	chr6:132637000-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132638800-132654800	Weak transcription	Fetal Kidney	kidney
5	chr6:132639000-132648800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:132639000-132651200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
10	chr6:132644600-132647200	Strong transcription	NHDF-Ad	bronchial
11	chr6:132644600-132649200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:132645000-132655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:132646400-132651600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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