Variant report

Variant	rs73546020
Chromosome Location	chr6:132653258-132653259
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17061204	0.85[EUR][1000 genomes]
rs2876176	0.85[EUR][1000 genomes]
rs4895935	0.85[EUR][1000 genomes]
rs56352231	1.00[EUR][1000 genomes]
rs58201648	0.92[EUR][1000 genomes]
rs58272798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60561448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546003	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546006	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546009	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546027	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546091	0.85[EUR][1000 genomes]
rs7754123	1.00[EUR][1000 genomes]
rs7771227	1.00[EUR][1000 genomes]
rs9483435	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132635600-132655000	Weak transcription	NH-A	brain
2	chr6:132638800-132654800	Weak transcription	Fetal Kidney	kidney
3	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
6	chr6:132645000-132655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:132648200-132654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:132651000-132655000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:132652000-132654800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:132652000-132665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132652400-132654000	Enhancers	NHDF-Ad	bronchial
12	chr6:132652400-132654200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr6:132652600-132653800	Weak transcription	A549	lung
14	chr6:132652600-132654600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:132652600-132654800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:132652600-132654800	Weak transcription	HMEC	breast
17	chr6:132652800-132653800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:132652800-132654200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:132652800-132657600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:132653000-132654800	Weak transcription	NHEK	skin
21	chr6:132653200-132654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:132653200-132654800	Weak transcription	Placenta	Placenta
23	chr6:132653200-132654800	Weak transcription	NHLF	lung
24	chr6:132653200-132655000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links