Variant report

Variant	rs2876176
Chromosome Location	chr6:132672421-132672422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17061204	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56352231	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58201648	0.91[ASN][1000 genomes]
rs58272798	0.85[EUR][1000 genomes]
rs60561448	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546003	0.85[EUR][1000 genomes]
rs73546006	0.85[EUR][1000 genomes]
rs73546009	0.85[EUR][1000 genomes]
rs73546020	0.85[EUR][1000 genomes]
rs73546027	0.83[ASN][1000 genomes]
rs73546028	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546029	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73546091	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754123	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7771227	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
2	chr6:132656000-132676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132656800-132675400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132656800-132676000	Weak transcription	NHDF-Ad	bronchial
5	chr6:132658200-132674000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:132658200-132674800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132666200-132674000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:132666200-132675400	Weak transcription	Osteobl	bone
9	chr6:132666400-132676000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:132669600-132678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:132671200-132678400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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