Variant report

Variant	rs9493275
Chromosome Location	chr6:132616654-132616655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132182612-132191683..6:132614342-132616667	H1-hESC	embryonic stem cell:	embryo
2	6:132269655-132282174..6:132614342-132616667	H1-hESC	embryonic stem cell:	embryo
3	chr6:132600646..132601168-chr6:132616048..132617057,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1079654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754360	0.89[EUR][1000 genomes]
rs11760080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs15017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569524	0.93[EUR][1000 genomes]
rs1569525	0.93[EUR][1000 genomes]
rs1569526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17061146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41286160	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41286162	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6569789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6903616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925076	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992830	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72992838	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739007	1.00[JPT][hapmap]
rs7760422	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765608	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483432	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132611000-132625600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:132611200-132617000	Weak transcription	NHDF-Ad	bronchial
3	chr6:132612600-132626400	Weak transcription	Fetal Stomach	stomach
4	chr6:132614400-132619000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132615000-132617000	Weak transcription	Fetal Kidney	kidney
6	chr6:132615400-132617200	Weak transcription	Osteobl	bone
7	chr6:132615600-132618000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
9	chr6:132616200-132620400	Weak transcription	Esophagus	oesophagus
10	chr6:132616200-132625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132616400-132617200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:132616600-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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