Variant report

Variant	rs1570106
Chromosome Location	chr14:68813115-68813116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68806501..68808073-chr14:68812909..68815753,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12889206	0.86[CEU][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1810623	0.86[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4902564	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4902567	0.86[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6573834	0.87[ASW][hapmap];0.93[CEU][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap]
rs7150454	0.86[CEU][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7160221	0.86[CEU][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72727425	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8003738	0.86[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Height	20881960	GWAS catalog

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68804000-68813400	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:68808600-68819200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:68809000-68816400	Weak transcription	Fetal Intestine Large	intestine
4	chr14:68809200-68813200	Weak transcription	Small Intestine	intestine
5	chr14:68809400-68813200	Weak transcription	Primary B cells from cord blood	blood
6	chr14:68811000-68813200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:68811000-68813600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:68811000-68816400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:68811800-68816400	Weak transcription	Fetal Brain Male	brain
11	chr14:68812000-68814400	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr14:68812200-68814800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:68812400-68813200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:68812400-68813200	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:68812400-68813400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:68812400-68814000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr14:68812400-68814800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr14:68812400-68818600	Enhancers	Fetal Stomach	stomach
19	chr14:68812800-68813800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr14:68812800-68816000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr14:68813000-68813200	Enhancers	Rectal Smooth Muscle	rectum
22	chr14:68813000-68813400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:68813000-68813600	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:68813000-68813800	Enhancers	Stomach Smooth Muscle	stomach
25	chr14:68813000-68814000	Enhancers	Brain Angular Gyrus	brain
26	chr14:68813000-68814000	Enhancers	Brain Anterior Caudate	brain
27	chr14:68813000-68814000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr14:68813000-68814000	Enhancers	Brain Substantia Nigra	brain
29	chr14:68813000-68814600	Enhancers	Fetal Lung	lung
30	chr14:68813000-68814800	Enhancers	Brain Hippocampus Middle	brain

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