Variant report

Variant	rs7160221
Chromosome Location	chr14:68798110-68798111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12889206	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1570106	0.86[CEU][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1810623	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902564	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4902567	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6573834	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs7150454	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72727425	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8003738	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:68786800-68798800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:68787400-68798400	Weak transcription	Fetal Stomach	stomach
6	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:68790800-68799200	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:68792600-68798200	Weak transcription	Fetal Intestine Small	intestine
10	chr14:68793800-68798200	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68795000-68798200	Weak transcription	Primary B cells from cord blood	blood
12	chr14:68795400-68799200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:68796400-68798200	Weak transcription	GM12878-XiMat	blood
14	chr14:68796600-68799800	Enhancers	Fetal Lung	lung
15	chr14:68796800-68800200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr14:68797400-68798400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr14:68798000-68798800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr14:68798000-68799400	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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