Variant report

Variant	rs4902567
Chromosome Location	chr14:68800600-68800601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68793230..68795249-chr14:68798426..68801112,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12889206	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570106	0.86[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1810623	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902564	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573834	0.94[CEU][hapmap]
rs7150454	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160221	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72727425	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003738	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68798200-68800600	Enhancers	Colon Smooth Muscle	Colon
6	chr14:68798200-68802400	Enhancers	Primary B cells from cord blood	blood
7	chr14:68799200-68801600	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:68799200-68802200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:68799400-68804000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:68799400-68806400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:68799600-68800800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:68799600-68803400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:68799600-68804000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:68799600-68806400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:68799800-68802200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:68799800-68808000	Weak transcription	Fetal Lung	lung
17	chr14:68800000-68800600	Enhancers	Primary T cells from cord blood	blood
18	chr14:68800000-68803800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:68800000-68804200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:68800000-68807400	Weak transcription	Fetal Stomach	stomach
21	chr14:68800000-68808200	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:68800000-68808400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:68800200-68803400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:68800200-68803400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr14:68800200-68803600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr14:68800200-68804000	Enhancers	GM12878-XiMat	blood
27	chr14:68800400-68802200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr14:68800400-68803400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr14:68800600-68802000	Weak transcription	Primary T cells from cord blood	blood
30	chr14:68800600-68803400	Weak transcription	Colon Smooth Muscle	Colon

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