Variant report

Variant	rs1570481
Chromosome Location	chr1:59230951-59230952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:59230714-59230986	IMR90	lung:	n/a	n/a
2	PBX3	chr1:59229732-59231129	SK-N-SH	brain:	n/a	n/a
3	FOS	chr1:59230721-59231068	HUVEC	blood vessel:	n/a	n/a
4	TCF12	chr1:59229604-59231130	SK-N-SH	brain:	n/a	n/a
5	FOS	chr1:59230066-59231025	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr1:59230120-59230998	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr1:59229894-59231023	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59229058..59237226-chr1:59244356..59250672,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264081	TF binding region
ENSG00000177606	Chromatin interaction

rs_ID	r²[population]
rs12563337	0.82[ASN][1000 genomes]
rs2760488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59226600-59239000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:59227000-59231400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:59227000-59231400	Enhancers	HMEC	breast
4	chr1:59227400-59231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59227400-59231400	Enhancers	NHLF	lung
6	chr1:59227600-59231400	Enhancers	Hela-S3	cervix
7	chr1:59227800-59231000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:59227800-59231000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:59227800-59231000	Enhancers	HSMM	muscle
10	chr1:59227800-59231200	Enhancers	NHEK	skin
11	chr1:59228200-59231200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:59229000-59238600	Weak transcription	Stomach Mucosa	stomach
13	chr1:59229200-59238800	Weak transcription	Liver	Liver
14	chr1:59229400-59231000	Enhancers	HepG2	liver
15	chr1:59229400-59231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:59229400-59231600	Enhancers	HUVEC	blood vessel
17	chr1:59229400-59234000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:59229400-59235800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:59229400-59238800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:59229400-59238800	Weak transcription	Right Ventricle	heart
21	chr1:59229400-59239000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:59229600-59231000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:59229600-59231200	Enhancers	Primary hematopoietic stem cells	blood
24	chr1:59229600-59231600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:59229600-59234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:59229800-59231800	Enhancers	NHDF-Ad	bronchial
27	chr1:59230000-59231400	Enhancers	Osteobl	bone
28	chr1:59230000-59231600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:59230000-59231800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr1:59230000-59234400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:59230000-59238800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:59230200-59234600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:59230400-59231200	Enhancers	NH-A	brain
34	chr1:59230400-59231600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:59230400-59238800	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:59230600-59231600	Weak transcription	Aorta	Aorta
37	chr1:59230600-59238800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr1:59230800-59234400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:59230800-59234800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:59230800-59234800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links