Variant report

Variant	rs2760488
Chromosome Location	chr1:59231953-59231954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59229058..59237226-chr1:59244356..59250672,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177606	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12563337	0.85[ASN][1000 genomes]
rs1570481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2760488	MYSM1	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59226600-59239000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:59229000-59238600	Weak transcription	Stomach Mucosa	stomach
3	chr1:59229200-59238800	Weak transcription	Liver	Liver
4	chr1:59229400-59234000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:59229400-59235800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:59229400-59238800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:59229400-59238800	Weak transcription	Right Ventricle	heart
8	chr1:59229400-59239000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:59229600-59234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:59230000-59234400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:59230000-59238800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:59230200-59234600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:59230400-59238800	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:59230600-59238800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:59230800-59234400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:59230800-59234800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:59230800-59234800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:59231000-59233800	Weak transcription	HSMM	muscle
19	chr1:59231000-59234400	Weak transcription	HepG2	liver
20	chr1:59231000-59234800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:59231000-59238800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:59231200-59234800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:59231200-59234800	Weak transcription	NH-A	brain
24	chr1:59231200-59234800	Weak transcription	NHEK	skin
25	chr1:59231400-59234400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:59231400-59234800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:59231400-59234800	Weak transcription	HMEC	breast
28	chr1:59231400-59238800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:59231600-59234600	Weak transcription	HUVEC	blood vessel
30	chr1:59231600-59238000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:59231800-59232000	Enhancers	NHLF	lung
32	chr1:59231800-59233600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:59231800-59233800	Weak transcription	NHDF-Ad	bronchial

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