Variant report

Variant	rs1570815
Chromosome Location	chr1:67139667-67139668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67139502..67143000-chr1:67146148..67149567,3	K562	blood:

Variant related genes	Relation type
ENSG00000118473	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10749765	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10789214	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789215	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10889641	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10889642	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889643	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889644	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11208932	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1280280	0.87[EUR][1000 genomes]
rs1325261	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1325263	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1329978	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1536115	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2025595	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2031478	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2146904	0.88[EUR][1000 genomes]
rs2147777	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2483705	0.86[EUR][1000 genomes]
rs2872078	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4655506	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4655647	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4655648	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4655650	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs492109	0.86[EUR][1000 genomes]
rs499263	0.87[EUR][1000 genomes]
rs502690	0.86[EUR][1000 genomes]
rs523132	0.87[EUR][1000 genomes]
rs523188	0.87[EUR][1000 genomes]
rs523956	0.86[EUR][1000 genomes]
rs524114	0.86[EUR][1000 genomes]
rs536410	0.86[EUR][1000 genomes]
rs602513	0.86[EUR][1000 genomes]
rs618093	0.87[EUR][1000 genomes]
rs6588215	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs659291	0.87[EUR][1000 genomes]
rs665319	0.87[EUR][1000 genomes]
rs6656550	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6659968	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6668603	0.87[EUR][1000 genomes]
rs6669023	0.87[EUR][1000 genomes]
rs6670378	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6680876	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6680944	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6681460	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7519747	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7521111	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7521123	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7538938	0.83[EUR][1000 genomes]
rs7542924	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7554101	0.89[EUR][1000 genomes]
rs9659879	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9662943	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9662962	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
2	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
3	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:67109200-67141800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:67109600-67155000	Weak transcription	Brain Anterior Caudate	brain
6	chr1:67111400-67154800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:67114200-67142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:67114200-67156400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:67114600-67142200	Weak transcription	NHLF	lung
10	chr1:67118800-67140400	Weak transcription	Aorta	Aorta
11	chr1:67121200-67145400	Weak transcription	Brain Angular Gyrus	brain
12	chr1:67122000-67141200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:67131800-67141600	Weak transcription	NH-A	brain
14	chr1:67133200-67141800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:67135200-67154200	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:67135600-67155400	Weak transcription	Brain Substantia Nigra	brain
17	chr1:67135800-67141800	Weak transcription	NHDF-Ad	bronchial
18	chr1:67136600-67141600	Weak transcription	Osteobl	bone
19	chr1:67137000-67141800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:67137400-67140200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:67137400-67148000	Weak transcription	Fetal Brain Female	brain
22	chr1:67137600-67155000	Weak transcription	Brain Germinal Matrix	brain
23	chr1:67137800-67155000	Weak transcription	Fetal Brain Male	brain
24	chr1:67138000-67147200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:67138000-67154800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:67138800-67139800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:67139200-67140600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:67139200-67146400	Weak transcription	Fetal Lung	lung
29	chr1:67139600-67148000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links