Variant report

Variant	rs6680876
Chromosome Location	chr1:67129482-67129483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1032634	0.92[CEU][hapmap]
rs1032635	0.92[CEU][hapmap]
rs10749763	1.00[CEU][hapmap]
rs10749765	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10789210	0.95[CEU][hapmap]
rs10789214	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10789215	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs10889634	1.00[CEU][hapmap]
rs10889635	0.96[CEU][hapmap]
rs10889641	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10889642	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10889643	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10889644	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11208932	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1280280	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1280310	0.85[CEU][hapmap]
rs1325261	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1325263	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1329978	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1536115	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1562217	1.00[CEU][hapmap]
rs1570815	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1856318	0.89[CEU][hapmap]
rs2025595	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2031478	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2146904	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2147777	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2483704	0.92[CEU][hapmap]
rs2483705	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2872078	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2916	0.84[CEU][hapmap]
rs4655506	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4655636	0.96[CEU][hapmap]
rs4655646	0.80[EUR][1000 genomes]
rs4655647	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4655648	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4655650	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs485521	0.92[CEU][hapmap]
rs492109	0.82[EUR][1000 genomes]
rs499263	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs502690	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs523132	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs523188	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs523956	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs524114	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs536410	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs536527	0.92[CEU][hapmap]
rs539014	0.84[CEU][hapmap]
rs602513	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs603750	0.92[CEU][hapmap]
rs618093	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs628655	0.85[CEU][hapmap]
rs6588207	1.00[CEU][hapmap]
rs6588215	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs659291	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs665319	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs6656550	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6656912	0.96[CEU][hapmap]
rs6659968	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6668603	0.83[EUR][1000 genomes]
rs6669023	0.83[EUR][1000 genomes]
rs6670378	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6680944	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6681460	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6689864	1.00[CEU][hapmap]
rs6696927	1.00[CEU][hapmap]
rs6697088	1.00[CEU][hapmap]
rs7519747	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7521111	0.96[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7521123	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7524818	1.00[CEU][hapmap]
rs7524851	0.80[EUR][1000 genomes]
rs7538938	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7542924	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7554101	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9659879	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9662943	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9662962	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
2	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
3	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:67108000-67136200	Weak transcription	Fetal Brain Female	brain
5	chr1:67109200-67141800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:67109600-67134200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:67109600-67155000	Weak transcription	Brain Anterior Caudate	brain
8	chr1:67110800-67134400	Weak transcription	Brain Substantia Nigra	brain
9	chr1:67111000-67135200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:67111400-67154800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:67114200-67134200	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:67114200-67142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:67114200-67156400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:67114600-67142200	Weak transcription	NHLF	lung
15	chr1:67118800-67138800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:67118800-67140400	Weak transcription	Aorta	Aorta
17	chr1:67121200-67145400	Weak transcription	Brain Angular Gyrus	brain
18	chr1:67122000-67130000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:67122000-67141200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:67122400-67132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:67126600-67134800	Weak transcription	Fetal Kidney	kidney
22	chr1:67128600-67131000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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