Variant report

Variant	rs7524851
Chromosome Location	chr1:67093018-67093019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67088339..67090517-chr1:67091923..67094068,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10749763	0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10789210	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10889634	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10889635	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10889641	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10889643	1.00[YRI][hapmap]
rs11208932	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1325261	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1325263	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1329978	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1373911	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1445575	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1536115	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1562217	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1856318	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2031478	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2044400	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2147777	0.81[EUR][1000 genomes]
rs2872078	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4655628	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4655631	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4655633	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4655635	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4655636	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4655640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4655646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4655647	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655648	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655650	1.00[YRI][hapmap]
rs547926	0.85[YRI][hapmap]
rs6588207	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6656550	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6656912	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6659968	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6670378	0.82[EUR][1000 genomes]
rs6680876	0.80[EUR][1000 genomes]
rs6680944	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6681460	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6689864	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6696927	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6697088	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7521111	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7521123	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7524818	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7532173	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs964574	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9659879	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9662943	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9662962	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs996123	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9988483	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:67084200-67099800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:67088400-67114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
5	chr1:67090800-67094600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:67090800-67099600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:67090800-67108400	Weak transcription	Brain Anterior Caudate	brain
8	chr1:67091000-67099000	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:67091200-67100800	Weak transcription	Brain Angular Gyrus	brain
10	chr1:67091200-67100800	Weak transcription	NHLF	lung
11	chr1:67091200-67107400	Weak transcription	NHDF-Ad	bronchial
12	chr1:67091200-67108600	Weak transcription	Osteobl	bone
13	chr1:67091200-67108800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:67091200-67128000	Weak transcription	NH-A	brain
15	chr1:67091400-67093200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:67091400-67098200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:67091400-67105200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:67091400-67107400	Weak transcription	Fetal Brain Female	brain
19	chr1:67091600-67094000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:67092000-67093200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:67092000-67117200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:67092200-67099800	Weak transcription	Psoas Muscle	Psoas
23	chr1:67092200-67114200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:67092600-67093200	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr1:67092600-67095400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:67092800-67093200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:67093000-67093200	ZNF genes & repeats	Aorta	Aorta

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