Variant report

Variant	rs9662962
Chromosome Location	chr1:67121364-67121365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67111893..67113546-chr1:67120474..67122903,2	K562	blood:
2	chr1:67117841..67120415-chr1:67120949..67123925,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1032634	0.91[CEU][hapmap]
rs1032635	0.91[CEU][hapmap]
rs10749763	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10749765	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10789210	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10789214	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10789215	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10889634	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10889635	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10889641	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10889642	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10889643	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10889644	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs11208932	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1280280	0.91[CEU][hapmap]
rs1280310	0.83[CEU][hapmap]
rs1325261	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1325263	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1329978	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1373911	0.81[EUR][1000 genomes]
rs1445575	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1536115	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1562217	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1570815	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1856318	0.87[CEU][hapmap]
rs2025595	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2031478	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2146904	0.91[CEU][hapmap]
rs2147777	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2483704	0.91[CEU][hapmap]
rs2483705	0.91[CEU][hapmap]
rs2872078	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2916	0.82[CEU][hapmap]
rs4655506	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs4655628	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4655631	0.82[EUR][1000 genomes]
rs4655633	0.88[EUR][1000 genomes]
rs4655635	0.88[EUR][1000 genomes]
rs4655636	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4655640	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4655646	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4655647	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4655648	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4655650	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs485521	0.91[CEU][hapmap]
rs499263	0.91[CEU][hapmap]
rs502690	0.87[CEU][hapmap]
rs523132	0.91[CEU][hapmap]
rs523188	0.90[CEU][hapmap]
rs523956	0.91[CEU][hapmap]
rs524114	0.91[CEU][hapmap]
rs536410	0.95[CEU][hapmap]
rs536527	0.91[CEU][hapmap]
rs539014	0.81[CEU][hapmap]
rs602513	0.91[CEU][hapmap]
rs603750	0.91[CEU][hapmap]
rs618093	0.91[CEU][hapmap]
rs628655	0.83[CEU][hapmap]
rs6588207	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6588215	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs659291	0.91[CEU][hapmap]
rs665319	0.91[CEU][hapmap]
rs6656550	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6656912	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6659968	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670378	1.00[CEU][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6680876	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6680944	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6681460	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689864	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6696927	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6697088	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7519747	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7521111	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7521123	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7524818	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7524851	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7532173	0.85[EUR][1000 genomes]
rs7538938	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7542924	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7554101	0.91[CEU][hapmap]
rs964574	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9659879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9662943	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
2	chr1:67091200-67128000	Weak transcription	NH-A	brain
3	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
4	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:67108000-67136200	Weak transcription	Fetal Brain Female	brain
6	chr1:67109200-67141800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:67109600-67134200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:67109600-67155000	Weak transcription	Brain Anterior Caudate	brain
9	chr1:67110800-67134400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:67111000-67135200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:67111400-67154800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:67114200-67134200	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:67114200-67142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:67114200-67156400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:67114600-67142200	Weak transcription	NHLF	lung
16	chr1:67118600-67123200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:67118800-67138800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:67118800-67140400	Weak transcription	Aorta	Aorta
19	chr1:67120600-67122000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:67120600-67122400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:67120800-67122000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:67121200-67145400	Weak transcription	Brain Angular Gyrus	brain

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