Variant report

Variant	rs10749763
Chromosome Location	chr1:67062126-67062127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1032634	0.92[CEU][hapmap]
rs1032635	0.92[CEU][hapmap]
rs10749765	0.96[CEU][hapmap]
rs10789210	0.95[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10789214	0.96[CEU][hapmap]
rs10789215	0.96[CEU][hapmap]
rs10889634	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10889635	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889641	1.00[CEU][hapmap]
rs10889642	0.96[CEU][hapmap]
rs10889643	0.96[CEU][hapmap];0.85[YRI][hapmap]
rs10889644	0.96[CEU][hapmap]
rs11208932	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1280280	0.92[CEU][hapmap]
rs1280310	0.85[CEU][hapmap]
rs1325261	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1325263	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1329978	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1373911	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1445575	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1536115	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1562217	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1856318	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2025595	0.96[CEU][hapmap]
rs2031478	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2044400	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2146904	0.92[CEU][hapmap]
rs2147777	1.00[CEU][hapmap]
rs2483704	0.92[CEU][hapmap]
rs2483705	0.92[CEU][hapmap]
rs2872078	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs2916	0.84[CEU][hapmap]
rs4655506	0.96[CEU][hapmap]
rs4655628	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4655631	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4655635	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4655636	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4655640	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4655646	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4655647	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4655648	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4655650	0.96[CEU][hapmap]
rs485521	0.92[CEU][hapmap]
rs499263	0.89[CEU][hapmap]
rs502690	0.88[CEU][hapmap]
rs523132	0.92[CEU][hapmap]
rs523188	0.92[CEU][hapmap]
rs523956	0.92[CEU][hapmap]
rs524114	0.92[CEU][hapmap]
rs536410	0.96[CEU][hapmap]
rs536527	0.92[CEU][hapmap]
rs539014	0.84[CEU][hapmap]
rs602513	0.92[CEU][hapmap]
rs603750	0.92[CEU][hapmap]
rs618093	0.92[CEU][hapmap]
rs628655	0.85[CEU][hapmap]
rs6588207	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588215	0.96[CEU][hapmap]
rs659291	0.92[CEU][hapmap]
rs665319	0.92[CEU][hapmap]
rs6656550	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6656912	0.96[CEU][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6659968	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6670378	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6680876	1.00[CEU][hapmap]
rs6680944	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6681460	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6689864	1.00[CEU][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6696927	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6697088	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7519747	0.96[CEU][hapmap]
rs7521111	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7521123	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7524818	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7524851	0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7532173	0.92[EUR][1000 genomes]
rs7542924	0.96[CEU][hapmap]
rs7554101	0.92[CEU][hapmap]
rs964574	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9659879	0.88[EUR][1000 genomes]
rs9662943	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9662962	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs996123	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003016	chr1:67043120-67067119	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1013476	chr1:67044630-67065911	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67041600-67062400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:67043200-67064400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:67043600-67066600	Weak transcription	Fetal Brain Male	brain
4	chr1:67044200-67064000	Weak transcription	NH-A	brain
5	chr1:67044800-67064000	Weak transcription	Osteobl	bone
6	chr1:67049600-67062600	Weak transcription	Psoas Muscle	Psoas
7	chr1:67051000-67064200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:67051000-67064400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:67051000-67065000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:67051200-67063200	Weak transcription	NHDF-Ad	bronchial
11	chr1:67051200-67064200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:67051200-67064400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:67051200-67064400	Weak transcription	Brain Substantia Nigra	brain
14	chr1:67051200-67066200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:67052200-67070800	Weak transcription	Fetal Heart	heart
16	chr1:67053800-67062200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:67055400-67064200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:67055400-67073000	Weak transcription	Left Ventricle	heart
19	chr1:67057200-67064000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:67057800-67073000	Weak transcription	Aorta	Aorta
21	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:67058200-67064400	Weak transcription	Brain Anterior Caudate	brain
23	chr1:67059200-67074400	Weak transcription	Fetal Lung	lung
24	chr1:67060400-67062200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:67060800-67064200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:67061000-67064200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:67061200-67063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:67061400-67064000	Weak transcription	NHLF	lung
29	chr1:67061800-67063800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:67062000-67063400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links