Variant report

Variant	rs964574
Chromosome Location	chr1:67062885-67062886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10749763	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10789210	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10889634	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10889635	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11208932	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1325261	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1325263	0.80[EUR][1000 genomes]
rs1329978	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1373911	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1445575	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1536115	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1562217	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1856318	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2031478	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2044400	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4655628	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4655631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4655635	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4655636	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4655640	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4655646	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4655647	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4655648	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6588207	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6656550	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6656912	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6659968	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6670378	0.81[EUR][1000 genomes]
rs6680944	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6681460	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6689864	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6696927	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6697088	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7521111	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7521123	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7524818	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7524851	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7532173	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9659879	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9662943	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9662962	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs996123	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003016	chr1:67043120-67067119	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1013476	chr1:67044630-67065911	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67043200-67064400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:67043600-67066600	Weak transcription	Fetal Brain Male	brain
3	chr1:67044200-67064000	Weak transcription	NH-A	brain
4	chr1:67044800-67064000	Weak transcription	Osteobl	bone
5	chr1:67051000-67064200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:67051000-67064400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:67051000-67065000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:67051200-67063200	Weak transcription	NHDF-Ad	bronchial
9	chr1:67051200-67064200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:67051200-67064400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:67051200-67064400	Weak transcription	Brain Substantia Nigra	brain
12	chr1:67051200-67066200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:67052200-67070800	Weak transcription	Fetal Heart	heart
14	chr1:67055400-67064200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:67055400-67073000	Weak transcription	Left Ventricle	heart
16	chr1:67057200-67064000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:67057800-67073000	Weak transcription	Aorta	Aorta
18	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:67058200-67064400	Weak transcription	Brain Anterior Caudate	brain
20	chr1:67059200-67074400	Weak transcription	Fetal Lung	lung
21	chr1:67060800-67064200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:67061000-67064200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:67061200-67063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:67061400-67064000	Weak transcription	NHLF	lung
25	chr1:67061800-67063800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:67062000-67063400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:67062200-67063200	Weak transcription	Brain Hippocampus Middle	brain
28	chr1:67062200-67064200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:67062400-67064200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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