Variant report

Variant	rs1571062
Chromosome Location	chr13:48216065-48216066
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11148069	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11148072	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11618417	0.90[ASN][1000 genomes]
rs11619432	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12430353	0.94[ASN][1000 genomes]
rs12584531	0.88[ASN][1000 genomes]
rs1571061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070615	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17070629	0.86[ASN][1000 genomes]
rs1853989	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1853990	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59106572	0.94[ASN][1000 genomes]
rs60130603	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61954664	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61954666	0.97[ASN][1000 genomes]
rs7324871	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9526370	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9534717	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv528243	chr13:48162558-48234112	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv983697	chr13:48213340-48221570	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48216000-48220600	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links