Variant report

Variant	rs1853989
Chromosome Location	chr13:48206275-48206276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11148069	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11148072	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11618417	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11619432	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12430353	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12584531	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1571061	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1571062	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17070615	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070629	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1853990	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59106572	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60130603	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61954664	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61954666	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324871	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526370	0.81[ASN][1000 genomes]
rs9534717	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900065	chr13:48106733-48215874	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528243	chr13:48162558-48234112	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48205800-48206800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:48205800-48207000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:48205800-48207000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:48205800-48207000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:48206000-48206800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:48206000-48207000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:48206000-48207000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:48206200-48206800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:48206200-48206800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:48206200-48206800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:48206200-48207000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr13:48206200-48207200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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