Variant report

Variant	rs60130603
Chromosome Location	chr13:48224437-48224438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11148069	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11148072	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11618417	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11619432	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12430353	0.96[ASN][1000 genomes]
rs12584531	0.90[ASN][1000 genomes]
rs1571061	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1571062	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17070615	0.93[ASN][1000 genomes]
rs17070629	0.92[ASN][1000 genomes]
rs1853989	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1853990	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59106572	0.96[ASN][1000 genomes]
rs61954664	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61954666	0.89[ASN][1000 genomes]
rs7324871	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9526370	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9534717	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv528243	chr13:48162558-48234112	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48224000-48224600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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