Variant report

Variant	rs157126
Chromosome Location	chr12:41406329-41406330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1083206	0.87[ASN][1000 genomes]
rs11178966	0.87[ASN][1000 genomes]
rs11179174	0.87[ASN][1000 genomes]
rs12296475	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12307865	0.87[ASN][1000 genomes]
rs12321608	0.85[EUR][1000 genomes]
rs12809837	0.85[EUR][1000 genomes]
rs12811839	0.85[EUR][1000 genomes]
rs12824182	0.85[EUR][1000 genomes]
rs13328933	0.87[ASN][1000 genomes]
rs1442183	0.87[ASN][1000 genomes]
rs1442190	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1866996	0.87[ASN][1000 genomes]
rs278900	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs278901	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278902	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278903	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs278906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278909	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278914	0.87[ASN][1000 genomes]
rs280355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs280356	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs280359	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs280360	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs280361	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs280362	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs397967	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59599863	0.87[ASN][1000 genomes]
rs61443681	0.87[ASN][1000 genomes]
rs67249613	0.87[ASN][1000 genomes]
rs692211	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs693762	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134389	0.87[ASN][1000 genomes]
rs7139018	0.87[ASN][1000 genomes]
rs7301266	0.87[ASN][1000 genomes]
rs7305416	0.85[EUR][1000 genomes]
rs7312528	0.87[ASN][1000 genomes]
rs73275677	0.87[ASN][1000 genomes]
rs73275694	0.87[ASN][1000 genomes]
rs73277750	0.87[ASN][1000 genomes]
rs7980318	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9652040	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832382	chr12:41359550-41489681	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs157126	ZRSR2	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41403600-41406400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:41404800-41406400	ZNF genes & repeats	Liver	Liver
3	chr12:41405000-41406800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:41405200-41406400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:41405200-41429800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:41405400-41417600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:41405600-41423000	Weak transcription	Ovary	ovary
8	chr12:41406200-41406400	Weak transcription	Brain Angular Gyrus	brain
9	chr12:41406200-41406600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:41406200-41408000	Weak transcription	Fetal Lung	lung

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