Variant report

Variant	rs12809837
Chromosome Location	chr12:41448911-41448912
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41447343..41449022-chr12:41451324..41453086,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1083206	0.87[ASN][1000 genomes]
rs11178966	0.87[ASN][1000 genomes]
rs11179174	0.87[ASN][1000 genomes]
rs11179652	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12296475	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12307865	0.87[ASN][1000 genomes]
rs12314872	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12321608	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12811839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824182	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826830	0.81[EUR][1000 genomes]
rs13328933	0.87[ASN][1000 genomes]
rs13340830	0.81[EUR][1000 genomes]
rs1442183	0.87[ASN][1000 genomes]
rs1442190	1.00[CHB][hapmap]
rs157126	0.85[EUR][1000 genomes]
rs1866996	0.87[ASN][1000 genomes]
rs278900	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278901	0.85[EUR][1000 genomes]
rs278902	0.85[EUR][1000 genomes]
rs278903	0.87[ASN][1000 genomes]
rs278906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278909	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278914	0.87[ASN][1000 genomes]
rs280355	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs280356	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280359	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs280360	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs280361	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs280362	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3794251	0.81[EUR][1000 genomes]
rs397967	0.87[ASN][1000 genomes]
rs56695779	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs59142970	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59599863	0.87[ASN][1000 genomes]
rs61443681	0.87[ASN][1000 genomes]
rs67249613	0.87[ASN][1000 genomes]
rs692211	0.85[EUR][1000 genomes]
rs693762	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134389	0.87[ASN][1000 genomes]
rs7139018	0.87[ASN][1000 genomes]
rs7301266	0.87[ASN][1000 genomes]
rs7305416	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312528	0.87[ASN][1000 genomes]
rs73275677	0.87[ASN][1000 genomes]
rs73275694	0.87[ASN][1000 genomes]
rs73277750	0.87[ASN][1000 genomes]
rs7980318	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9652040	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832382	chr12:41359550-41489681	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41408200-41449800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:41429000-41469600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:41439800-41449600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr12:41446200-41449600	Weak transcription	A549	lung
5	chr12:41447800-41449200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:41448200-41456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:41448600-41449800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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