Variant report
| Variant | rs1575224 |
|---|---|
| Chromosome Location | chr1:119158957-119158958 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:119136212..119138135-chr1:119158343..119160261,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PSMC1P12 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1028611 | 0.87[ASN][1000 genomes] |
| rs10802043 | 0.88[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10923621 | 0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11800809 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11805468 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11809439 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12075403 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1343297 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1343302 | 0.81[ASN][1000 genomes] |
| rs1361841 | 0.83[ASN][1000 genomes] |
| rs1535362 | 0.87[ASN][1000 genomes] |
| rs17022211 | 0.82[ASN][1000 genomes] |
| rs1936065 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2135565 | 0.90[ASN][1000 genomes] |
| rs2145789 | 0.87[ASN][1000 genomes] |
| rs2221528 | 0.83[ASN][1000 genomes] |
| rs2659204 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35769342 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4144542 | 0.82[ASN][1000 genomes] |
| rs714374 | 0.87[ASN][1000 genomes] |
| rs9662189 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3494191 | chr1:118772550-119719548 | Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | esv3494192 | chr1:118772550-119719548 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
