Variant report

Variant	rs4144542
Chromosome Location	chr1:119259807-119259808
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:119079795..119080727-chr1:119259154..119260061,2	MCF-7	breast:
2	chr1:118765900..118766656-chr1:119259174..119259999,3	MCF-7	breast:
3	chr1:119106535..119107478-chr1:119259424..119260114,3	MCF-7	breast:
4	chr1:118847351..118848215-chr1:119259152..119260012,5	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1028611	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10923661	0.90[EUR][1000 genomes]
rs10923662	0.90[EUR][1000 genomes]
rs10923663	0.88[EUR][1000 genomes]
rs10923664	0.89[EUR][1000 genomes]
rs10923665	0.89[EUR][1000 genomes]
rs10923666	0.89[EUR][1000 genomes]
rs10923667	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10923668	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11800809	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11805468	0.81[ASN][1000 genomes]
rs11809439	0.82[ASN][1000 genomes]
rs12063988	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12075403	0.82[ASN][1000 genomes]
rs12092621	0.90[EUR][1000 genomes]
rs12403859	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12410095	0.90[EUR][1000 genomes]
rs1343297	0.81[ASN][1000 genomes]
rs1535362	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1570816	0.90[EUR][1000 genomes]
rs1575224	0.82[ASN][1000 genomes]
rs17022211	0.85[ASN][1000 genomes]
rs1936065	0.81[ASN][1000 genomes]
rs2145789	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35769342	0.81[ASN][1000 genomes]
rs4024602	0.90[EUR][1000 genomes]
rs57638467	0.90[EUR][1000 genomes]
rs60280756	0.90[EUR][1000 genomes]
rs60329508	0.90[EUR][1000 genomes]
rs61162175	0.90[EUR][1000 genomes]
rs6428780	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6674156	0.90[EUR][1000 genomes]
rs714374	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73016773	0.87[EUR][1000 genomes]
rs73016778	0.90[EUR][1000 genomes]
rs7521782	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs9787117	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3494191	chr1:118772550-119719548	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3494192	chr1:118772550-119719548	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv997707	chr1:119199568-119595949	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2750799	chr1:119229257-119382227	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv947315	chr1:119254254-119279475	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119259800-119260800	Enhancers	Colon Smooth Muscle	Colon
2	chr1:119259800-119260800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:119259800-119260800	Enhancers	Skeletal Muscle Female	skeletal muscle

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