Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1028611	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10923661	0.81[EUR][1000 genomes]
rs10923662	0.81[EUR][1000 genomes]
rs10923667	0.81[EUR][1000 genomes]
rs10923668	0.81[EUR][1000 genomes]
rs11800809	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11805468	0.86[ASN][1000 genomes]
rs11809439	0.87[ASN][1000 genomes]
rs12063988	0.81[EUR][1000 genomes]
rs12075403	0.87[ASN][1000 genomes]
rs12092621	0.81[EUR][1000 genomes]
rs12403859	0.81[EUR][1000 genomes]
rs12410095	0.81[EUR][1000 genomes]
rs1343297	0.86[ASN][1000 genomes]
rs1535362	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570816	0.81[EUR][1000 genomes]
rs1575224	0.87[ASN][1000 genomes]
rs17022211	0.93[ASN][1000 genomes]
rs1936065	0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35769342	0.86[ASN][1000 genomes]
rs4024602	0.81[EUR][1000 genomes]
rs4144542	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57638467	0.81[EUR][1000 genomes]
rs60280756	0.81[EUR][1000 genomes]
rs60329508	0.81[EUR][1000 genomes]
rs61162175	0.81[EUR][1000 genomes]
rs6428780	0.81[EUR][1000 genomes]
rs6674156	0.81[EUR][1000 genomes]
rs714374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73016778	0.81[EUR][1000 genomes]
rs7521782	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9787117	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3494191	chr1:118772550-119719548	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3494192	chr1:118772550-119719548	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119190800-119194200	Enhancers	Fetal Heart	heart
2	chr1:119191800-119193600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:119192000-119194200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr1:119192600-119193800	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:119192800-119193400	Enhancers	Fetal Muscle Leg	muscle

Quick Search: