Variant report

Variant	rs1576621
Chromosome Location	chr9:18106650-18106651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10738500	0.85[EUR][1000 genomes]
rs10963451	0.85[ASN][1000 genomes]
rs10963453	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963454	0.88[ASN][1000 genomes]
rs10963455	0.88[ASN][1000 genomes]
rs10963456	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1329926	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16936310	0.83[ASN][1000 genomes]
rs16936317	0.83[ASN][1000 genomes]
rs7020592	0.84[EUR][1000 genomes]
rs7031350	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7036762	0.81[EUR][1000 genomes]
rs7860016	0.84[EUR][1000 genomes]
rs878951	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18079000-18114800	Weak transcription	Aorta	Aorta
2	chr9:18105200-18107600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:18105200-18108000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:18105400-18107400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:18105600-18107600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:18105600-18108000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:18105600-18108200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:18105800-18107200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:18105800-18107400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:18105800-18108000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr9:18106000-18107400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:18106000-18107400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:18106200-18114800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:18106400-18106800	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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