Variant report

Variant	rs10963455
Chromosome Location	chr9:18105578-18105579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10756930	0.91[EUR][1000 genomes]
rs10756931	0.91[EUR][1000 genomes]
rs10810884	0.81[EUR][1000 genomes]
rs10810889	1.00[AFR][1000 genomes]
rs10810890	0.84[EUR][1000 genomes]
rs10810900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10810901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10963412	0.84[EUR][1000 genomes]
rs10963426	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10963433	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10963439	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10963440	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10963442	0.80[EUR][1000 genomes]
rs10963444	1.00[AMR][1000 genomes]
rs10963445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10963447	1.00[AFR][1000 genomes]
rs10963451	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963453	0.87[ASN][1000 genomes]
rs10963454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11532854	0.81[EUR][1000 genomes]
rs12237150	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12238245	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12553148	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12553925	0.87[EUR][1000 genomes]
rs12554268	0.87[EUR][1000 genomes]
rs12683106	1.00[AFR][1000 genomes]
rs12685471	0.87[EUR][1000 genomes]
rs12686274	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12686297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1329926	0.81[ASN][1000 genomes]
rs1576621	0.88[ASN][1000 genomes]
rs16936214	1.00[AFR][1000 genomes]
rs16936263	0.87[EUR][1000 genomes]
rs16936310	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16936317	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1854579	0.84[EUR][1000 genomes]
rs2026900	1.00[AFR][1000 genomes]
rs2026901	1.00[AFR][1000 genomes]
rs2210327	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72697434	1.00[AFR][1000 genomes]
rs72697455	1.00[AFR][1000 genomes]
rs72697457	1.00[AFR][1000 genomes]
rs72697489	0.91[EUR][1000 genomes]
rs72697491	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72699409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs878951	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18079000-18114800	Weak transcription	Aorta	Aorta
2	chr9:18104600-18105800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:18105200-18107600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:18105200-18108000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:18105400-18107400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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