Variant report

Variant	rs12683106
Chromosome Location	chr9:18003950-18003951
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10756930	0.81[EUR][1000 genomes]
rs10756931	0.81[EUR][1000 genomes]
rs10810884	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810889	1.00[AFR][1000 genomes]
rs10810890	0.87[EUR][1000 genomes]
rs10810900	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10810901	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10963392	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963412	0.87[EUR][1000 genomes]
rs10963426	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10963433	0.84[EUR][1000 genomes]
rs10963439	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10963440	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10963445	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10963447	1.00[AFR][1000 genomes]
rs10963454	1.00[AFR][1000 genomes]
rs10963455	1.00[AFR][1000 genomes]
rs11532854	0.84[EUR][1000 genomes]
rs12237150	1.00[AFR][1000 genomes]
rs12238245	1.00[AFR][1000 genomes]
rs12553148	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12553925	0.90[EUR][1000 genomes]
rs12554268	0.90[EUR][1000 genomes]
rs12685471	0.90[EUR][1000 genomes]
rs12686274	0.81[EUR][1000 genomes]
rs12686297	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16936214	1.00[AFR][1000 genomes]
rs16936263	0.90[EUR][1000 genomes]
rs16936310	1.00[AFR][1000 genomes]
rs1854579	0.87[EUR][1000 genomes]
rs2026900	1.00[AFR][1000 genomes]
rs2026901	1.00[AFR][1000 genomes]
rs2210327	1.00[AFR][1000 genomes]
rs58805966	1.00[AMR][1000 genomes]
rs72697434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72697455	1.00[AFR][1000 genomes]
rs72697457	1.00[AFR][1000 genomes]
rs72697489	0.81[EUR][1000 genomes]
rs72697491	0.84[EUR][1000 genomes]
rs72699409	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv518330	chr9:17965723-18017562	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17988200-18004400	Weak transcription	Aorta	Aorta
2	chr9:18002000-18012000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:18003600-18004600	Enhancers	Liver	Liver
4	chr9:18003800-18004200	Weak transcription	Fetal Intestine Large	intestine

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