Variant report
Variant | rs2210327 |
---|---|
Chromosome Location | chr9:18109235-18109236 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10756930 | 0.85[EUR][1000 genomes] |
rs10756931 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs10810889 | 1.00[AFR][1000 genomes] |
rs10810890 | 0.90[AMR][1000 genomes] |
rs10810900 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10810901 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10963412 | 0.90[AMR][1000 genomes] |
rs10963426 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs10963433 | 0.87[EUR][1000 genomes] |
rs10963439 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs10963440 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs10963444 | 0.90[AMR][1000 genomes] |
rs10963445 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10963447 | 1.00[AFR][1000 genomes] |
rs10963451 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10963454 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10963455 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11792843 | 0.90[AMR][1000 genomes] |
rs12237150 | 1.00[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs12238245 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12553148 | 1.00[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs12553925 | 0.81[EUR][1000 genomes] |
rs12554268 | 0.81[EUR][1000 genomes] |
rs12683106 | 1.00[AFR][1000 genomes] |
rs12685471 | 0.81[EUR][1000 genomes] |
rs12686274 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs12686297 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs16936214 | 1.00[AFR][1000 genomes] |
rs16936263 | 0.81[EUR][1000 genomes] |
rs16936310 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs16936317 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1854579 | 0.90[AMR][1000 genomes] |
rs2026900 | 1.00[AFR][1000 genomes] |
rs2026901 | 1.00[AFR][1000 genomes] |
rs72697434 | 1.00[AFR][1000 genomes] |
rs72697455 | 1.00[AFR][1000 genomes] |
rs72697457 | 1.00[AFR][1000 genomes] |
rs72697489 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs72697491 | 0.87[EUR][1000 genomes] |
rs72699409 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1021605 | chr9:18002205-18271109 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv466280 | chr9:18033944-18166112 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv471288 | chr9:18033944-18166112 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv613723 | chr9:18033944-18166112 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv892679 | chr9:18044802-18226609 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv892680 | chr9:18089614-18267185 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
Disease | PMID | Source |
---|---|---|
Heart failure | 20445134 | GWAS catalog |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs2210327 | CCL3 | trans | brain | seeQTL |
rs2210327 | CCL4 | trans | brain | seeQTL |
rs2210327 | EGR2 | trans | brain | seeQTL |
rs2210327 | FOSB | trans | brain | seeQTL |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:18079000-18114800 | Weak transcription | Aorta | Aorta |
2 | chr9:18106200-18114800 | Weak transcription | Colon Smooth Muscle | Colon |