Variant report

Variant	rs10963447
Chromosome Location	chr9:18099395-18099396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10810889	1.00[AFR][1000 genomes]
rs10810900	1.00[AFR][1000 genomes]
rs10810901	1.00[AFR][1000 genomes]
rs10963426	1.00[AFR][1000 genomes]
rs10963439	1.00[AFR][1000 genomes]
rs10963440	1.00[AFR][1000 genomes]
rs10963444	0.84[ASN][1000 genomes]
rs10963445	1.00[AFR][1000 genomes]
rs10963454	1.00[AFR][1000 genomes]
rs10963455	1.00[AFR][1000 genomes]
rs12237150	1.00[AFR][1000 genomes]
rs12238245	1.00[AFR][1000 genomes]
rs12553148	1.00[AFR][1000 genomes]
rs12683106	1.00[AFR][1000 genomes]
rs12686297	1.00[AFR][1000 genomes]
rs16936214	1.00[AFR][1000 genomes]
rs16936310	1.00[AFR][1000 genomes]
rs2026900	1.00[AFR][1000 genomes]
rs2026901	1.00[AFR][1000 genomes]
rs2210327	1.00[AFR][1000 genomes]
rs72697434	1.00[AFR][1000 genomes]
rs72697455	1.00[AFR][1000 genomes]
rs72697457	1.00[AFR][1000 genomes]
rs72699409	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18079000-18114800	Weak transcription	Aorta	Aorta
2	chr9:18099000-18105200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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