Variant report

Variant	rs2026900
Chromosome Location	chr9:18054737-18054738
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10756930	0.85[ASN][1000 genomes]
rs10756931	0.84[ASN][1000 genomes]
rs10810889	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10810900	1.00[AFR][1000 genomes]
rs10810901	1.00[AFR][1000 genomes]
rs10963426	1.00[AFR][1000 genomes]
rs10963439	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10963440	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10963445	1.00[AFR][1000 genomes]
rs10963447	1.00[AFR][1000 genomes]
rs10963454	1.00[AFR][1000 genomes]
rs10963455	1.00[AFR][1000 genomes]
rs12237150	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12238245	1.00[AFR][1000 genomes]
rs12553148	1.00[AFR][1000 genomes]
rs12553159	0.86[EUR][1000 genomes]
rs12683106	1.00[AFR][1000 genomes]
rs12686297	1.00[AFR][1000 genomes]
rs16936214	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16936310	1.00[AFR][1000 genomes]
rs2026901	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2210327	1.00[AFR][1000 genomes]
rs60685907	0.82[ASN][1000 genomes]
rs7020592	0.81[ASN][1000 genomes]
rs7036762	0.81[ASN][1000 genomes]
rs72697434	1.00[AFR][1000 genomes]
rs72697455	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72697457	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72697491	0.85[ASN][1000 genomes]
rs72699409	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892678	chr9:18033944-18082567	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18038400-18061600	Weak transcription	Aorta	Aorta
2	chr9:18052400-18056000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:18054600-18055400	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr9:18054600-18056000	Enhancers	Rectal Mucosa Donor 31	rectum

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