Variant report

Variant	rs12553925
Chromosome Location	chr9:18031974-18031975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10756930	0.91[EUR][1000 genomes]
rs10756931	0.91[EUR][1000 genomes]
rs10810884	0.93[EUR][1000 genomes]
rs10810890	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810891	0.80[EUR][1000 genomes]
rs10810900	0.93[EUR][1000 genomes]
rs10810901	0.93[EUR][1000 genomes]
rs10963392	0.87[EUR][1000 genomes]
rs10963395	0.88[EUR][1000 genomes]
rs10963412	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10963426	0.91[EUR][1000 genomes]
rs10963433	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10963439	0.91[EUR][1000 genomes]
rs10963440	0.91[EUR][1000 genomes]
rs10963442	0.80[EUR][1000 genomes]
rs10963445	0.91[EUR][1000 genomes]
rs10963451	0.87[EUR][1000 genomes]
rs10963454	0.87[EUR][1000 genomes]
rs10963455	0.87[EUR][1000 genomes]
rs11532854	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789500	0.81[ASN][1000 genomes]
rs11792843	0.83[EUR][1000 genomes]
rs12237150	0.87[EUR][1000 genomes]
rs12553148	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12554268	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12683106	0.90[EUR][1000 genomes]
rs12685471	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12686274	0.91[EUR][1000 genomes]
rs12686297	0.91[EUR][1000 genomes]
rs16936263	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16936310	0.82[EUR][1000 genomes]
rs16936317	0.82[EUR][1000 genomes]
rs1854579	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2210327	0.81[EUR][1000 genomes]
rs58805966	0.83[EUR][1000 genomes]
rs72697434	0.90[EUR][1000 genomes]
rs72697489	0.91[EUR][1000 genomes]
rs72697491	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72699409	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18022400-18036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:18031600-18032200	Enhancers	Fetal Brain Male	brain
3	chr9:18031600-18032600	Enhancers	Fetal Brain Female	brain
4	chr9:18031600-18032800	Enhancers	Aorta	Aorta

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