Variant report
Variant | rs11532854 |
---|---|
Chromosome Location | chr9:18029361-18029362 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10756930 | 0.85[EUR][1000 genomes] |
rs10756931 | 0.85[EUR][1000 genomes] |
rs10810884 | 0.87[EUR][1000 genomes] |
rs10810889 | 0.81[ASN][1000 genomes] |
rs10810890 | 0.90[EUR][1000 genomes] |
rs10810891 | 0.89[ASN][1000 genomes] |
rs10810900 | 0.87[EUR][1000 genomes] |
rs10810901 | 0.87[EUR][1000 genomes] |
rs10963392 | 0.81[EUR][1000 genomes] |
rs10963395 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10963412 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
rs10963426 | 0.85[EUR][1000 genomes] |
rs10963433 | 0.87[EUR][1000 genomes] |
rs10963439 | 0.85[EUR][1000 genomes] |
rs10963440 | 0.85[EUR][1000 genomes] |
rs10963445 | 0.85[EUR][1000 genomes] |
rs10963451 | 0.81[EUR][1000 genomes] |
rs10963454 | 0.81[EUR][1000 genomes] |
rs10963455 | 0.81[EUR][1000 genomes] |
rs11531658 | 0.91[ASN][1000 genomes] |
rs12237150 | 0.81[EUR][1000 genomes] |
rs12553148 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12553925 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12554268 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs12683106 | 0.84[EUR][1000 genomes] |
rs12685471 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12686274 | 0.85[EUR][1000 genomes] |
rs12686297 | 0.85[EUR][1000 genomes] |
rs16936263 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1854579 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
rs1854581 | 0.90[ASN][1000 genomes] |
rs72697434 | 0.84[EUR][1000 genomes] |
rs72697489 | 0.85[EUR][1000 genomes] |
rs72697491 | 0.87[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs72699409 | 0.82[EUR][1000 genomes] |
rs7850361 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv613706 | chr9:17718918-18090934 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv613707 | chr9:17720175-18070475 | Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv613708 | chr9:17720175-18072085 | Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1021862 | chr9:17931213-18052101 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | esv2752288 | chr9:17965723-18036892 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv1021605 | chr9:18002205-18271109 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:18022400-18031600 | Weak transcription | Aorta | Aorta |
2 | chr9:18022400-18036000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |