Variant report

Variant	rs10963433
Chromosome Location	chr9:18074611-18074612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10756930	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756931	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810884	0.87[EUR][1000 genomes]
rs10810890	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810900	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10810901	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10963392	0.81[EUR][1000 genomes]
rs10963395	0.82[EUR][1000 genomes]
rs10963412	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10963426	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10963432	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10963435	0.81[ASN][1000 genomes]
rs10963439	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10963440	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10963442	0.86[EUR][1000 genomes]
rs10963444	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10963445	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10963451	0.94[EUR][1000 genomes]
rs10963454	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10963455	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11532854	0.87[EUR][1000 genomes]
rs11792843	0.89[AMR][1000 genomes]
rs12237150	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12553148	0.93[EUR][1000 genomes]
rs12553925	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12554268	0.93[EUR][1000 genomes]
rs12683106	0.84[EUR][1000 genomes]
rs12685471	0.93[EUR][1000 genomes]
rs12686274	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12686297	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16936263	0.93[EUR][1000 genomes]
rs16936310	0.88[EUR][1000 genomes]
rs16936317	0.88[EUR][1000 genomes]
rs1854579	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2210327	0.87[EUR][1000 genomes]
rs72697434	0.84[EUR][1000 genomes]
rs72697489	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72697491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72699409	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892678	chr9:18033944-18082567	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18068000-18075800	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:18072400-18077800	Weak transcription	Aorta	Aorta
3	chr9:18073000-18075600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr9:18073200-18075000	Enhancers	Ovary	ovary
5	chr9:18073400-18074800	Enhancers	Colonic Mucosa	Colon
6	chr9:18073800-18075000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:18074000-18075400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:18074000-18076200	Weak transcription	Fetal Heart	heart
9	chr9:18074200-18075600	Weak transcription	Fetal Lung	lung
10	chr9:18074200-18075600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr9:18074400-18075600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:18074400-18075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:18074400-18075800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:18074400-18076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:18074400-18080600	Weak transcription	Fetal Muscle Leg	muscle

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