Variant report

Variant	rs1577073
Chromosome Location	chr10:16227181-16227182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10159534	0.81[EUR][1000 genomes]
rs10737010	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10737011	0.90[EUR][1000 genomes]
rs10795356	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904693	0.94[EUR][1000 genomes]
rs1340133	0.81[EUR][1000 genomes]
rs1340134	0.89[EUR][1000 genomes]
rs1340137	0.92[EUR][1000 genomes]
rs1340138	0.92[EUR][1000 genomes]
rs1340139	0.92[EUR][1000 genomes]
rs1417093	0.89[EUR][1000 genomes]
rs1538762	0.86[EUR][1000 genomes]
rs1578266	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591933	0.90[EUR][1000 genomes]
rs1591934	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1832657	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856726	0.90[EUR][1000 genomes]
rs1890848	0.86[ASN][1000 genomes]
rs2151948	0.94[EUR][1000 genomes]
rs2185386	0.81[EUR][1000 genomes]
rs2486896	0.92[EUR][1000 genomes]
rs2486906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883626	0.90[EUR][1000 genomes]
rs2991895	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4575155	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747265	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602081	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602082	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602088	0.81[EUR][1000 genomes]
rs7081816	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894900	chr10:15285306-16232093	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1049806	chr10:16065973-16228249	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3342684	chr10:16224995-16255206	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16217400-16239000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:16224200-16227200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:16224400-16227400	Weak transcription	Adipose Nuclei	Adipose
4	chr10:16224600-16227600	Enhancers	HSMMtube	muscle
5	chr10:16224800-16227800	Enhancers	HSMM	muscle
6	chr10:16225000-16228200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:16226200-16227800	Enhancers	NHDF-Ad	bronchial
8	chr10:16226800-16227200	Enhancers	HMEC	breast
9	chr10:16226800-16227600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links