Variant report

Variant	rs6602082
Chromosome Location	chr10:16231265-16231266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10159534	0.82[AMR][1000 genomes]
rs10737010	0.91[EUR][1000 genomes]
rs10737011	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10795356	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904693	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1340133	0.82[AMR][1000 genomes]
rs1340134	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1340137	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1340138	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1340139	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1417093	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1538762	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1577073	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578266	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591933	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1591934	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1832657	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856726	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1890848	0.86[ASN][1000 genomes]
rs2151948	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2486896	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2486906	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883626	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2991895	0.87[EUR][1000 genomes]
rs4575155	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747265	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602081	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602088	0.84[AMR][1000 genomes]
rs7081816	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894900	chr10:15285306-16232093	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv3342684	chr10:16224995-16255206	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16217400-16239000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:16229000-16234400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:16229000-16235400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:16229000-16236400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:16229200-16234400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:16229200-16234800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:16229200-16235000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:16230200-16231400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:16230200-16233200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:16231200-16231800	Enhancers	HSMMtube	muscle

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