Variant report

Variant	rs4747265
Chromosome Location	chr10:16222577-16222578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10737010	0.89[EUR][1000 genomes]
rs10737011	0.87[EUR][1000 genomes]
rs10795356	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904693	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1340134	0.86[EUR][1000 genomes]
rs1340137	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1340138	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1340139	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1417093	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1538762	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1577073	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578266	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591933	0.87[EUR][1000 genomes]
rs1591934	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1832657	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856726	0.87[EUR][1000 genomes]
rs1890848	0.86[ASN][1000 genomes]
rs2151948	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2486896	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486906	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883626	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2991895	0.86[EUR][1000 genomes]
rs4575155	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602081	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6602082	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081816	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894900	chr10:15285306-16232093	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1049806	chr10:16065973-16228249	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4747265	NMT2	cis	cerebellum	SCAN
rs4747265	STAM	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16217400-16239000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:16220200-16223800	Weak transcription	NHDF-Ad	bronchial

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