Variant report

Variant	rs1577405
Chromosome Location	chr13:80309652-80309653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12583817	1.00[EUR][1000 genomes]
rs12584683	1.00[EUR][1000 genomes]
rs1414111	0.96[EUR][1000 genomes]
rs17071815	0.96[EUR][1000 genomes]
rs17189468	1.00[EUR][1000 genomes]
rs17793708	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7330531	0.98[EUR][1000 genomes]
rs74099688	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900589	chr13:80250511-80310295	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80299400-80310000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80309000-80310000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:80309200-80310000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:80309200-80310600	Enhancers	HSMMtube	muscle
5	chr13:80309400-80309800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:80309400-80310000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:80309400-80310000	Enhancers	Fetal Muscle Leg	muscle
8	chr13:80309400-80310200	Enhancers	Left Ventricle	heart
9	chr13:80309400-80310400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:80309400-80310400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr13:80309400-80310600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr13:80309600-80309800	Enhancers	Right Atrium	heart
13	chr13:80309600-80310000	Enhancers	HSMM	muscle
14	chr13:80309600-80311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr13:80309600-80311600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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