Variant report

Variant	rs17793708
Chromosome Location	chr13:80376490-80376491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12583817	0.85[EUR][1000 genomes]
rs12584683	0.85[EUR][1000 genomes]
rs1414111	0.81[EUR][1000 genomes]
rs1577405	0.85[EUR][1000 genomes]
rs17071815	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17189468	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17801828	1.00[AFR][1000 genomes]
rs7330531	0.84[EUR][1000 genomes]
rs74099688	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80367800-80377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:80373600-80377000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:80373600-80377000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:80373600-80377400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:80373600-80378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:80373600-80378000	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:80373800-80377000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:80373800-80377600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:80373800-80378000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:80373800-80378200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:80373800-80378200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:80373800-80379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:80374200-80379600	Weak transcription	HSMMtube	muscle
14	chr13:80374200-80384000	Weak transcription	Fetal Heart	heart
15	chr13:80376200-80377000	Weak transcription	Spleen	Spleen
16	chr13:80376400-80376800	Enhancers	Brain Hippocampus Middle	brain
17	chr13:80376400-80376800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr13:80376400-80378400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:80376400-80378400	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links