Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12583646	0.97[ASN][1000 genomes]
rs12583817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584347	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12584389	0.92[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12585395	0.92[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1335287	0.91[JPT][hapmap]
rs1414111	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1577405	1.00[EUR][1000 genomes]
rs17071815	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17189468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17793708	0.89[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs56336080	0.85[AFR][1000 genomes]
rs57650273	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7330531	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74099682	0.88[AFR][1000 genomes]
rs74099685	0.96[AFR][1000 genomes]
rs74099688	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74099689	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs74099690	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74099692	0.88[AFR][1000 genomes]
rs74099693	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74099696	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs74099697	0.88[AFR][1000 genomes]
rs74099698	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs74099699	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80319600-80330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:80324600-80328200	Weak transcription	Ovary	ovary
3	chr13:80324600-80328200	Weak transcription	HSMM	muscle
4	chr13:80325000-80341400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:80325400-80327600	Weak transcription	HSMMtube	muscle

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