Variant report

Variant	rs74099690
Chromosome Location	chr13:80330041-80330042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12583646	0.99[ASN][1000 genomes]
rs12583817	0.96[ASN][1000 genomes]
rs12584347	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12584389	0.84[ASN][1000 genomes]
rs12584683	0.98[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12585395	0.85[ASN][1000 genomes]
rs1335287	0.80[ASN][1000 genomes]
rs1414111	0.95[ASN][1000 genomes]
rs17071815	0.97[ASN][1000 genomes]
rs56336080	0.86[AFR][1000 genomes]
rs57650273	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7330531	0.97[ASN][1000 genomes]
rs74099682	0.90[AFR][1000 genomes]
rs74099685	0.98[AFR][1000 genomes]
rs74099688	0.95[ASN][1000 genomes]
rs74099689	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs74099692	0.90[AFR][1000 genomes]
rs74099693	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs74099696	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74099697	0.90[AFR][1000 genomes]
rs74099698	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74099699	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80319600-80330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:80325000-80341400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:80330000-80330200	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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