Variant report

Variant	rs74099682
Chromosome Location	chr13:80314914-80314915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12584347	0.90[AFR][1000 genomes]
rs12584683	0.88[AFR][1000 genomes]
rs56336080	0.88[AFR][1000 genomes]
rs57650273	0.90[AFR][1000 genomes]
rs74099685	0.92[AFR][1000 genomes]
rs74099689	0.92[AFR][1000 genomes]
rs74099690	0.90[AFR][1000 genomes]
rs74099692	0.92[AFR][1000 genomes]
rs74099693	0.90[AFR][1000 genomes]
rs74099696	0.90[AFR][1000 genomes]
rs74099697	0.92[AFR][1000 genomes]
rs74099698	0.90[AFR][1000 genomes]
rs74099699	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80309800-80324400	Weak transcription	Right Atrium	heart
2	chr13:80310000-80315000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:80310000-80315000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:80310000-80315000	Weak transcription	HSMM	muscle
5	chr13:80310200-80315200	Weak transcription	Left Ventricle	heart
6	chr13:80310400-80319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:80310600-80315000	Weak transcription	HSMMtube	muscle
8	chr13:80311400-80318400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:80311400-80324000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:80311600-80317000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:80311600-80323800	Weak transcription	HMEC	breast
12	chr13:80313600-80315000	Weak transcription	NH-A	brain
13	chr13:80313800-80316200	Enhancers	Fetal Kidney	kidney
14	chr13:80314600-80315000	Enhancers	Hela-S3	cervix
15	chr13:80314600-80315400	Enhancers	Fetal Intestine Small	intestine
16	chr13:80314600-80315600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:80314600-80315600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:80314600-80315800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr13:80314600-80315800	Enhancers	Fetal Heart	heart
20	chr13:80314600-80315800	Enhancers	Fetal Intestine Large	intestine
21	chr13:80314800-80315400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:80314800-80315400	Enhancers	NHEK	skin
23	chr13:80314800-80315800	Enhancers	Fetal Stomach	stomach
24	chr13:80314800-80316200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links