Variant report

Variant	rs74099693
Chromosome Location	chr13:80350061-80350062
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:80349642..80350601-chr13:80938014..80938651,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12583646	0.96[ASN][1000 genomes]
rs12583817	0.94[ASN][1000 genomes]
rs12584347	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12584389	0.86[ASN][1000 genomes]
rs12584683	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12585395	0.88[ASN][1000 genomes]
rs1335287	0.83[ASN][1000 genomes]
rs1414111	0.93[ASN][1000 genomes]
rs17071815	0.95[ASN][1000 genomes]
rs56336080	0.94[AFR][1000 genomes]
rs57650273	1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7330531	0.95[ASN][1000 genomes]
rs74099682	0.90[AFR][1000 genomes]
rs74099685	0.90[AFR][1000 genomes]
rs74099688	0.93[ASN][1000 genomes]
rs74099689	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs74099690	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs74099692	0.98[AFR][1000 genomes]
rs74099696	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74099697	0.98[AFR][1000 genomes]
rs74099698	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74099699	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80347000-80353800	Weak transcription	Psoas Muscle	Psoas
2	chr13:80348400-80350800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:80349400-80351200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:80349400-80354400	Enhancers	Fetal Intestine Small	intestine
5	chr13:80349600-80350800	Enhancers	A549	lung
6	chr13:80349600-80351000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:80349600-80351000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:80349600-80351000	Enhancers	Fetal Heart	heart
9	chr13:80349600-80351000	Enhancers	HSMM	muscle
10	chr13:80349600-80351200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:80349600-80351600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:80349600-80351800	Enhancers	NHDF-Ad	bronchial
13	chr13:80349600-80357600	Enhancers	Fetal Intestine Large	intestine
14	chr13:80349800-80350200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:80349800-80350400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:80349800-80350400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:80349800-80350400	Enhancers	Adipose Nuclei	Adipose
18	chr13:80349800-80350400	Enhancers	Fetal Kidney	kidney
19	chr13:80349800-80350400	Enhancers	NH-A	brain
20	chr13:80349800-80350600	Enhancers	Brain Anterior Caudate	brain
21	chr13:80349800-80350800	Enhancers	Fetal Lung	lung
22	chr13:80349800-80351000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr13:80349800-80351000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr13:80349800-80351000	Enhancers	HUVEC	blood vessel
25	chr13:80349800-80351200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr13:80349800-80351200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr13:80349800-80351200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:80349800-80351800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr13:80349800-80354000	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr13:80349800-80358600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:80350000-80351000	Enhancers	HMEC	breast
32	chr13:80350000-80353400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr13:80350000-80354000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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