Variant report

Variant	rs12585395
Chromosome Location	chr13:80377915-80377916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr13:80377882-80378349	T-47D	breast:	n/a	chr13:80378234-80378244

Variant related genes	Relation type
LINC01038	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12583646	0.86[ASN][1000 genomes]
rs12583817	0.84[ASN][1000 genomes]
rs12584347	0.86[ASN][1000 genomes]
rs12584389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12584683	0.84[ASN][1000 genomes]
rs1335287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1414111	0.83[ASN][1000 genomes]
rs17071815	0.85[ASN][1000 genomes]
rs57650273	0.86[ASN][1000 genomes]
rs7330531	0.85[ASN][1000 genomes]
rs74099688	0.83[ASN][1000 genomes]
rs74099689	0.83[ASN][1000 genomes]
rs74099690	0.85[ASN][1000 genomes]
rs74099693	0.88[ASN][1000 genomes]
rs74099696	0.89[ASN][1000 genomes]
rs74099698	0.89[ASN][1000 genomes]
rs74099699	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80373600-80378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:80373600-80378000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:80373800-80378000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:80373800-80378200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:80373800-80378200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:80373800-80379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:80374200-80379600	Weak transcription	HSMMtube	muscle
8	chr13:80374200-80384000	Weak transcription	Fetal Heart	heart
9	chr13:80376400-80378400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:80376400-80378400	Weak transcription	Hela-S3	cervix
11	chr13:80376600-80379800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr13:80376600-80379800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr13:80376800-80378600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:80377000-80378000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:80377000-80378000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:80377000-80378200	Enhancers	Primary B cells from cord blood	blood
17	chr13:80377000-80380200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr13:80377000-80384000	Weak transcription	HUVEC	blood vessel
19	chr13:80377200-80378000	Weak transcription	Spleen	Spleen
20	chr13:80377200-80378400	Enhancers	Primary B cells from peripheral blood	blood
21	chr13:80377200-80379400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:80377200-80380000	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr13:80377400-80378800	Enhancers	Fetal Thymus	thymus
24	chr13:80377400-80379400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:80377400-80385400	Weak transcription	Brain Hippocampus Middle	brain
26	chr13:80377600-80378600	Enhancers	Fetal Lung	lung
27	chr13:80377600-80378800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr13:80377600-80380000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr13:80377600-80380200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr13:80377600-80381200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr13:80377800-80378400	Enhancers	A549	lung
32	chr13:80377800-80378800	Enhancers	Primary hematopoietic stem cells	blood
33	chr13:80377800-80378800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr13:80377800-80379400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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