Variant report

Variant	rs74099696
Chromosome Location	chr13:80363092-80363093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12583646	0.95[ASN][1000 genomes]
rs12583817	0.95[ASN][1000 genomes]
rs12584347	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12584389	0.88[ASN][1000 genomes]
rs12584683	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12585395	0.89[ASN][1000 genomes]
rs1335287	0.84[ASN][1000 genomes]
rs1414111	0.94[ASN][1000 genomes]
rs17071815	0.96[ASN][1000 genomes]
rs56336080	0.94[AFR][1000 genomes]
rs57650273	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7330531	0.96[ASN][1000 genomes]
rs74099682	0.90[AFR][1000 genomes]
rs74099685	0.90[AFR][1000 genomes]
rs74099688	0.94[ASN][1000 genomes]
rs74099689	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74099690	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74099692	0.98[AFR][1000 genomes]
rs74099693	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74099697	0.98[AFR][1000 genomes]
rs74099698	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74099699	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80357000-80370400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:80362800-80363200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:80362800-80363200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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