Variant report

Variant	rs74099685
Chromosome Location	chr13:80320502-80320503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12584347	0.90[AFR][1000 genomes]
rs12584683	0.96[AFR][1000 genomes]
rs56336080	0.88[AFR][1000 genomes]
rs57650273	0.90[AFR][1000 genomes]
rs74099682	0.92[AFR][1000 genomes]
rs74099689	1.00[AFR][1000 genomes]
rs74099690	0.98[AFR][1000 genomes]
rs74099692	0.92[AFR][1000 genomes]
rs74099693	0.90[AFR][1000 genomes]
rs74099696	0.90[AFR][1000 genomes]
rs74099697	0.92[AFR][1000 genomes]
rs74099698	0.90[AFR][1000 genomes]
rs74099699	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1039333	chr13:80289936-80333167	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80309800-80324400	Weak transcription	Right Atrium	heart
2	chr13:80311400-80324000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:80311600-80323800	Weak transcription	HMEC	breast
4	chr13:80315400-80323000	Weak transcription	Fetal Muscle Leg	muscle
5	chr13:80315400-80324400	Weak transcription	Pancreas	Pancrea
6	chr13:80315400-80324400	Weak transcription	Small Intestine	intestine
7	chr13:80315800-80323000	Weak transcription	Fetal Heart	heart
8	chr13:80315800-80324600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:80317400-80322000	Weak transcription	Ovary	ovary
10	chr13:80317400-80323600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:80317400-80324000	Weak transcription	NHEK	skin
12	chr13:80319200-80324400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:80319400-80322800	Weak transcription	Fetal Kidney	kidney
14	chr13:80319600-80324000	Weak transcription	Fetal Stomach	stomach
15	chr13:80319600-80330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:80319800-80322800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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