Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr10:45748698-45749125	GM10847	blood:	n/a	n/a
2	RCOR1	chr10:45749042-45749273	K562	blood:	n/a	n/a
3	RELA	chr10:45748497-45749207	GM18505	blood:	n/a	n/a
4	RELA	chr10:45748584-45749161	GM18951	blood:	n/a	n/a
5	RELA	chr10:45748633-45749159	GM15510	blood:	n/a	n/a
6	SPI1	chr10:45748396-45749146	GM12878	blood:	n/a	n/a
7	RELA	chr10:45748575-45749132	GM19099	blood:	n/a	n/a
8	RCOR1	chr10:45748956-45749347	K562	blood:	n/a	n/a
9	RELA	chr10:45748678-45749235	GM19193	blood:	n/a	n/a
10	RELA	chr10:45748598-45749258	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
OR6D1P	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11239419	0.91[ASN][1000 genomes]
rs11239421	0.92[ASN][1000 genomes]
rs12266548	0.88[ASN][1000 genomes]
rs12765621	0.90[ASN][1000 genomes]
rs1583420	0.92[ASN][1000 genomes]
rs1583421	0.92[ASN][1000 genomes]
rs1836468	0.92[ASN][1000 genomes]
rs1836469	0.92[ASN][1000 genomes]
rs1836470	0.92[ASN][1000 genomes]
rs1856593	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1856594	0.94[ASN][1000 genomes]
rs1988025	0.90[ASN][1000 genomes]
rs4948663	0.93[ASN][1000 genomes]
rs4948669	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4948670	0.92[ASN][1000 genomes]
rs4948987	0.92[ASN][1000 genomes]
rs4948988	0.92[ASN][1000 genomes]
rs6593477	0.92[ASN][1000 genomes]
rs7097007	0.92[ASN][1000 genomes]
rs7912175	0.92[ASN][1000 genomes]
rs984955	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1578206	FAM60A	trans	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45745600-45750200	Weak transcription	Right Atrium	heart
2	chr10:45748000-45749400	Enhancers	GM12878-XiMat	blood
3	chr10:45748600-45749200	Enhancers	Primary B cells from peripheral blood	blood

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