Variant report
| Variant | rs6593477 |
|---|---|
| Chromosome Location | chr10:45796001-45796002 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:45784676..45786999-chr10:45793740..45796267,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11239419 | 0.99[ASN][1000 genomes] |
| rs11239421 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12266548 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12765621 | 0.99[ASN][1000 genomes] |
| rs1578206 | 0.92[ASN][1000 genomes] |
| rs1583420 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1583421 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1836468 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1836469 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1836470 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1856593 | 0.88[ASN][1000 genomes] |
| rs1856594 | 0.86[ASN][1000 genomes] |
| rs1988025 | 0.98[ASN][1000 genomes] |
| rs4948663 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4948669 | 0.99[ASN][1000 genomes] |
| rs4948670 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4948987 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4948988 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7071166 | 0.85[ASN][1000 genomes] |
| rs7097007 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7912175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs984955 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2750897 | chr10:45550145-45820136 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv895105 | chr10:45636867-45928822 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv430166 | chr10:45668894-46148794 | Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 4 | nsv993428 | chr10:45742877-46224333 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45796000-45798600 | Weak transcription | Thymus | Thymus |
